Systematic benchmarking of single-cell ATAC-sequencing protocols

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Location: Deutsche Nationalbibliothek Frankfurt am Main

Extent: 1 Online-Ressource.

Language: Englisch

Bibliographic citation: Systematic benchmarking of single-cell ATAC-sequencing protocols ; volume:42 ; number:6 ; day:3 ; month:8 ; year:2023 ; pages:916-926 ; date:6.2024
Nature biotechnology ; 42, Heft 6 (3.8.2023), 916-926, 6.2024

Creator: De Rop, Florian V.
Hulselmans, Gert
Flerin, Chris
Soler-Vila, Paula
Rafels, Albert
Christiaens, Valerie
González-Blas, Carmen Bravo
Marchese, Domenica
Caratù, Ginevra
Poovathingal, Suresh
Rozenblatt-Rosen, Orit
Slyper, Michael
Luo, Wendy
Muus, Christoph
Duarte, Fabiana
Shrestha, Rojesh
Bagdatli, S. Tansu
Corces, M. Ryan
Mamanova, Lira
Knights, Andrew
Meyer, Kerstin B.
Mulqueen, Ryan
Taherinasab, Akram
Maschmeyer, Patrick
Pezoldt, Jörn
Lambert, Camille Lucie Germaine
Iglesias, Marta
Najle, Sebastián R.
Dossani, Zain Y.
Martelotto, Luciano G.
Burkett, Zach
Lebofsky, Ronald
Martin-Subero, José Ignacio
Pillai, Satish
Sebé-Pedrós, Arnau
Deplancke, Bart
Teichmann, Sarah A.
Ludwig, Leif Si-Hun
Braun, Theodore P.
Adey, Andrew C.
Greenleaf, William J.
Buenrostro, Jason D.
Regev, Aviv
Aerts, Stein
Heyn, Holger

Contributor: SpringerLink (Online service)

DOI: 10.1038/s41587-023-01881-x

URN: urn:nbn:de:101:1-2408210901249.141615711684

Rights: Open Access; Der Zugriff auf das Objekt ist unbeschränkt möglich.

Last update: 14.08.2025, 11:00 AM CEST

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Associated

De Rop, Florian V.
Hulselmans, Gert
Flerin, Chris
Soler-Vila, Paula
Rafels, Albert
Christiaens, Valerie
González-Blas, Carmen Bravo
Marchese, Domenica
Caratù, Ginevra
Poovathingal, Suresh
Rozenblatt-Rosen, Orit
Slyper, Michael
Luo, Wendy
Muus, Christoph
Duarte, Fabiana
Shrestha, Rojesh
Bagdatli, S. Tansu
Corces, M. Ryan
Mamanova, Lira
Knights, Andrew
Meyer, Kerstin B.
Mulqueen, Ryan
Taherinasab, Akram
Maschmeyer, Patrick
Pezoldt, Jörn
Lambert, Camille Lucie Germaine
Iglesias, Marta
Najle, Sebastián R.
Dossani, Zain Y.
Martelotto, Luciano G.
Burkett, Zach
Lebofsky, Ronald
Martin-Subero, José Ignacio
Pillai, Satish
Sebé-Pedrós, Arnau
Deplancke, Bart
Teichmann, Sarah A.
Ludwig, Leif Si-Hun
Braun, Theodore P.
Adey, Andrew C.
Greenleaf, William J.
Buenrostro, Jason D.
Regev, Aviv
Aerts, Stein
Heyn, Holger
SpringerLink (Online service)

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scifi-ATAC-seq: massive-scale single-cell chromatin accessibility sequencing using combinatorial fluidic indexing

Benchmarking algorithms for joint integration of unpaired and paired single-cell RNA-seq and ATAC-seq data

zweidimensionales bewegtes Bild

Benchmarking computational doublet-detection methods for single-cell RNA sequencing data

Benchmarking principal component analysis for large-scale single-cell RNA-sequencing

scNanoATAC-seq: a long-read single-cell ATAC sequencing method to detect chromatin accessibility and genetic variants simultaneously within an individual cell

Modeling fragment counts improves single-cell ATAC-seq analysis

Benchmarking strategies for cross-species integration of single-cell RNA sequencing data

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scOpen : chromatin-accessibility estimation of single-cell ATAC data

simATAC: a single-cell ATAC-seq simulation framework

scATAC-pro: a comprehensive workbench for single-cell chromatin accessibility sequencing data

Benchmarking full-length transcript single cell mRNA sequencing protocols

scifi-ATAC-seq: massive-scale single-cell chromatin accessibility sequencing using combinatorial fluidic indexing

Benchmarking algorithms for joint integration of unpaired and paired single-cell RNA-seq and ATAC-seq data

zweidimensionales bewegtes Bild

Benchmarking computational doublet-detection methods for single-cell RNA sequencing data

Benchmarking principal component analysis for large-scale single-cell RNA-sequencing

scNanoATAC-seq: a long-read single-cell ATAC sequencing method to detect chromatin accessibility and genetic variants simultaneously within an individual cell

Modeling fragment counts improves single-cell ATAC-seq analysis

Benchmarking strategies for cross-species integration of single-cell RNA sequencing data

Single-cell ATAC-seq signal extraction and enhancement with SCATE

scOpen : chromatin-accessibility estimation of single-cell ATAC data

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Systematic benchmarking of single-cell ATAC-sequencing protocols

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Other Objects (12)

simATAC: a single-cell ATAC-seq simulation framework

scATAC-pro: a comprehensive workbench for single-cell chromatin accessibility sequencing data

Benchmarking full-length transcript single cell mRNA sequencing protocols

scifi-ATAC-seq: massive-scale single-cell chromatin accessibility sequencing using combinatorial fluidic indexing

Benchmarking algorithms for joint integration of unpaired and paired single-cell RNA-seq and ATAC-seq data

Benchmarking computational doublet-detection methods for single-cell RNA sequencing data

Benchmarking principal component analysis for large-scale single-cell RNA-sequencing

scNanoATAC-seq: a long-read single-cell ATAC sequencing method to detect chromatin accessibility and genetic variants simultaneously within an individual cell

Modeling fragment counts improves single-cell ATAC-seq analysis

Benchmarking strategies for cross-species integration of single-cell RNA sequencing data

Single-cell ATAC-seq signal extraction and enhancement with SCATE

scOpen : chromatin-accessibility estimation of single-cell ATAC data

simATAC: a single-cell ATAC-seq simulation framework

scATAC-pro: a comprehensive workbench for single-cell chromatin accessibility sequencing data

Benchmarking full-length transcript single cell mRNA sequencing protocols

scifi-ATAC-seq: massive-scale single-cell chromatin accessibility sequencing using combinatorial fluidic indexing

Benchmarking algorithms for joint integration of unpaired and paired single-cell RNA-seq and ATAC-seq data

Benchmarking computational doublet-detection methods for single-cell RNA sequencing data

Benchmarking principal component analysis for large-scale single-cell RNA-sequencing

scNanoATAC-seq: a long-read single-cell ATAC sequencing method to detect chromatin accessibility and genetic variants simultaneously within an individual cell

Modeling fragment counts improves single-cell ATAC-seq analysis

Benchmarking strategies for cross-species integration of single-cell RNA sequencing data

Single-cell ATAC-seq signal extraction and enhancement with SCATE

scOpen : chromatin-accessibility estimation of single-cell ATAC data

simATAC: a single-cell ATAC-seq simulation framework

scATAC-pro: a comprehensive workbench for single-cell chromatin accessibility sequencing data

Benchmarking full-length transcript single cell mRNA sequencing protocols

scifi-ATAC-seq: massive-scale single-cell chromatin accessibility sequencing using combinatorial fluidic indexing

Benchmarking algorithms for joint integration of unpaired and paired single-cell RNA-seq and ATAC-seq data

Benchmarking computational doublet-detection methods for single-cell RNA sequencing data

Benchmarking principal component analysis for large-scale single-cell RNA-sequencing

scNanoATAC-seq: a long-read single-cell ATAC sequencing method to detect chromatin accessibility and genetic variants simultaneously within an individual cell

Modeling fragment counts improves single-cell ATAC-seq analysis

Benchmarking strategies for cross-species integration of single-cell RNA sequencing data

Single-cell ATAC-seq signal extraction and enhancement with SCATE

scOpen : chromatin-accessibility estimation of single-cell ATAC data

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