Structure‐Based Design of a Macrocyclic PROTAC

Abstract: Constraining a molecule in its bioactive conformation via macrocyclization represents an attractive strategy to rationally design functional chemical probes. While this approach has been applied to enzyme inhibitors or receptor antagonists, to date it remains unprecedented for bifunctional molecules that bring proteins together, such as PROTAC degraders. Herein, we report the design and synthesis of a macrocyclic PROTAC by adding a cyclizing linker to the BET degrader MZ1. A co‐crystal structure of macroPROTAC‐1 bound in a ternary complex with VHL and the second bromodomain of Brd4 validated the rational design. Biophysical studies revealed enhanced discrimination between the second and the first bromodomains of BET proteins. Despite a 12‐fold loss of binary binding affinity for Brd4, macroPROTAC‐1 exhibited cellular activity comparable to MZ1. Our findings support macrocyclization as an advantageous strategy to enhance PROTAC degradation potency and selectivity between homologous targets.

Standort
Deutsche Nationalbibliothek Frankfurt am Main
Umfang
Online-Ressource
Sprache
Englisch

Erschienen in
Structure‐Based Design of a Macrocyclic PROTAC ; volume:59 ; number:4 ; year:2020 ; pages:1727-1734 ; extent:8
Angewandte Chemie / International edition. International edition ; 59, Heft 4 (2020), 1727-1734 (gesamt 8)

Urheber
Testa, Andrea
Hughes, Scott J.
Lucas, Xavier
Wright, Jane E.
Ciulli, Alessio

DOI
10.1002/anie.201914396
URN
urn:nbn:de:101:1-2022061313424280614460
Rechteinformation
Open Access; Der Zugriff auf das Objekt ist unbeschränkt möglich.
Letzte Aktualisierung
15.08.20252025, 03:28 MESZ

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Beteiligte

  • Testa, Andrea
  • Hughes, Scott J.
  • Lucas, Xavier
  • Wright, Jane E.
  • Ciulli, Alessio

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