A SARS-CoV-2 sequence submission tool for the European Nucleotide Archive

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Abstract: Summary

Many aspects of the global response to the COVID-19 pandemic are enabled by the fast and open publication of SARS-CoV-2 genetic sequence data. The European Nucleotide Archive (ENA) is the European recommended open repository for genetic sequences. In this work, we present a tool for submitting raw sequencing reads of SARS-CoV-2 to ENA. The tool features a single-step submission process, a graphical user interface, tabular-formatted metadata and the possibility to remove human reads prior to submission. A Galaxy wrap of the tool allows users with little or no bioinformatics knowledge to do bulk sequencing read submissions. The tool is also packed in a Docker container to ease deployment

Location: Deutsche Nationalbibliothek Frankfurt am Main

Extent: Online-Ressource

Language: Englisch

Notes: Bioinformatics. - 37, 21 (2021) , 3983-3985, ISSN: 1367-4803

Classification: Bibliotheks- und Informationswissenschaft

Event: Veröffentlichung

(where): Freiburg

(who): Universität

(when): 2024

Creator: Roncoroni, Miguel
Grüning, Björn
Backofen, Rolf
De Ruyck, Kim
D’Anna, Flora
Yusuf, Dilmurat
Coppens, Frederik

DOI: 10.1093/bioinformatics/btab421

URN: urn:nbn:de:bsz:25-freidok-2478377

Rights: Open Access; Der Zugriff auf das Objekt ist unbeschränkt möglich.

Last update: 14.08.2025, 10:59 AM CEST

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Associated

Roncoroni, Miguel
Grüning, Björn
Backofen, Rolf
De Ruyck, Kim
D’Anna, Flora
Yusuf, Dilmurat
Coppens, Frederik
Universität

Time of origin

2024

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A SARS-CoV-2 sequence submission tool for the European Nucleotide Archive

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