CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation

to related objects

Location: Deutsche Nationalbibliothek Frankfurt am Main

ISSN: 1471-2105

Extent: Online-Ressource

Language: Englisch

Notes: online resource.

Bibliographic citation: CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation ; volume:12 ; number:1 ; day:20 ; month:5 ; year:2011 ; pages:1-9 ; date:12.2011
BMC bioinformatics ; 12, Heft 1 (20.5.2011), 1-9, 12.2011

Creator: Kumar, Surendra

Contributor: Carlsen, Tor
Mevik, Bjørn-Helge
Enger, Pål
Blaalid, Rakel
Shalchian-Tabrizi, Kamran
Kauserud, Håvard
SpringerLink (Online service)

DOI: 10.1186/1471-2105-12-182

URN: urn:nbn:de:1111-2016021726518

Rights: Der Zugriff auf das Objekt ist unbeschränkt möglich.

Last update: 15.08.2025, 7:25 AM CEST

Data provider

This object is provided by:
Deutsche Nationalbibliothek. If you have any questions about the object, please contact the data provider.

Show original at data provider

Associated

Kumar, Surendra
Carlsen, Tor
Mevik, Bjørn-Helge
Enger, Pål
Blaalid, Rakel
Shalchian-Tabrizi, Kamran
Kauserud, Håvard
SpringerLink (Online service)

Other Objects (12)

Rapid and accurate taxonomic classification of cpn60 amplicon sequence variants

Ultra-accurate microbial amplicon sequencing with synthetic long reads

Flexible taxonomic assignment of ambiguous sequencing reads

Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data

Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments

Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes

Waldohreule

Waldohreule, Asio otus

Kapitel

III. Otus Bakkamoena

HiFi long-read amplicon sequencing for full-spectrum variants of human mtDNA

Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads

Deriving enzymatic and taxonomic signatures of metagenomes from short read data

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

Rapid and accurate taxonomic classification of cpn60 amplicon sequence variants

Ultra-accurate microbial amplicon sequencing with synthetic long reads

Flexible taxonomic assignment of ambiguous sequencing reads

Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data

Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments

Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes

Waldohreule

Waldohreule, Asio otus

Kapitel

III. Otus Bakkamoena

HiFi long-read amplicon sequencing for full-spectrum variants of human mtDNA

Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads

Deriving enzymatic and taxonomic signatures of metagenomes from short read data

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

Rapid and accurate taxonomic classification of cpn60 amplicon sequence variants

Ultra-accurate microbial amplicon sequencing with synthetic long reads

Flexible taxonomic assignment of ambiguous sequencing reads

Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data

Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments

Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes

Waldohreule

Waldohreule, Asio otus

Kapitel

III. Otus Bakkamoena

HiFi long-read amplicon sequencing for full-spectrum variants of human mtDNA

Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads

Deriving enzymatic and taxonomic signatures of metagenomes from short read data

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

Cultural heritage institutions wishing to register will find more information here.

Fields marked * need to be filled in.

Username*

Please enter your username

Email*

Please enter your email address

Please do not fill this field

First name

Last name

Password*

Please enter your password

Confirm password*

Please enter the same password

I have read the terms of use and the privacy policy for the collection of personal data and accept them. *

This field is required.

I would like to subscribe to the newsletter of the Deutsche Digitale Bibliothek. See newsletter subscription info.

Account created

Your "My DDB" account has been successfully created. Before you can log in to your account, you must click the confirmation link in the message we just sent to the email address you provided.

CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation

Object Details

References and Relationships

Contributors, Places and Time

Further information

Data provider

Associated

Other Objects (12)

Rapid and accurate taxonomic classification of cpn60 amplicon sequence variants

Ultra-accurate microbial amplicon sequencing with synthetic long reads

Flexible taxonomic assignment of ambiguous sequencing reads

Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data

Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments

Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes

Waldohreule, Asio otus

III. Otus Bakkamoena

HiFi long-read amplicon sequencing for full-spectrum variants of human mtDNA

Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads

Deriving enzymatic and taxonomic signatures of metagenomes from short read data

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

Rapid and accurate taxonomic classification of cpn60 amplicon sequence variants

Ultra-accurate microbial amplicon sequencing with synthetic long reads

Flexible taxonomic assignment of ambiguous sequencing reads

Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data

Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments

Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes

Waldohreule, Asio otus

III. Otus Bakkamoena

HiFi long-read amplicon sequencing for full-spectrum variants of human mtDNA

Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads

Deriving enzymatic and taxonomic signatures of metagenomes from short read data

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

Rapid and accurate taxonomic classification of cpn60 amplicon sequence variants

Ultra-accurate microbial amplicon sequencing with synthetic long reads

Flexible taxonomic assignment of ambiguous sequencing reads

Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data

Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments

Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes

Waldohreule, Asio otus

III. Otus Bakkamoena

HiFi long-read amplicon sequencing for full-spectrum variants of human mtDNA

Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads

Deriving enzymatic and taxonomic signatures of metagenomes from short read data

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

Related objects

Reset password