Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data

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Location: Deutsche Nationalbibliothek Frankfurt am Main

ISSN: 1471-2105

Extent: Online-Ressource

Language: Englisch

Notes: online resource.

Bibliographic citation: Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data ; volume:14 ; number:1 ; day:21 ; month:11 ; year:2013 ; pages:1-8 ; date:12.2013
BMC bioinformatics ; 14, Heft 1 (21.11.2013), 1-8, 12.2013

Creator: Hong, Changjin

Contributor: Clement, Nathan L.
Clement, Spencer
Hammoud, Saher Sue
Carrell, Douglas T.
Cairns, Bradley R.
Snell, Quinn
Clement, Mark J.
Johnson, William Evan
SpringerLink (Online service)

DOI: 10.1186/1471-2105-14-337

URN: urn:nbn:de:1111-2016021739571

Rights: Der Zugriff auf das Objekt ist unbeschränkt möglich.

Last update: 15.08.2025, 7:37 AM CEST

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Hong, Changjin
Clement, Nathan L.
Clement, Spencer
Hammoud, Saher Sue
Carrell, Douglas T.
Cairns, Bradley R.
Snell, Quinn
Clement, Mark J.
Johnson, William Evan
SpringerLink (Online service)

Other Objects (12)

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An effective method to resolve ambiguous bisulfite-treated reads

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BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage

Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data

Probabilistic approaches to alignment with tandem repeats

Featherweight long read alignment using partitioned reference indexes

Simultaneous alignment of short reads against multiple genomes

Oculus: faster sequence alignment by streaming read compression

Technology dictates algorithms: recent developments in read alignment

LSCplus: a fast solution for improving long read accuracy by short read alignment

Bison: bisulfite alignment on nodes of a cluster

An effective method to resolve ambiguous bisulfite-treated reads

BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage

Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data

Probabilistic approaches to alignment with tandem repeats

Featherweight long read alignment using partitioned reference indexes

Simultaneous alignment of short reads against multiple genomes

Oculus: faster sequence alignment by streaming read compression

Technology dictates algorithms: recent developments in read alignment

LSCplus: a fast solution for improving long read accuracy by short read alignment

Bison: bisulfite alignment on nodes of a cluster

An effective method to resolve ambiguous bisulfite-treated reads

BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage

Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data

Probabilistic approaches to alignment with tandem repeats

Featherweight long read alignment using partitioned reference indexes

Simultaneous alignment of short reads against multiple genomes

Oculus: faster sequence alignment by streaming read compression

Technology dictates algorithms: recent developments in read alignment

LSCplus: a fast solution for improving long read accuracy by short read alignment

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Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data

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Other Objects (12)

Bison: bisulfite alignment on nodes of a cluster

An effective method to resolve ambiguous bisulfite-treated reads

BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage

Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data

Probabilistic approaches to alignment with tandem repeats

Featherweight long read alignment using partitioned reference indexes

Simultaneous alignment of short reads against multiple genomes

Oculus: faster sequence alignment by streaming read compression

Technology dictates algorithms: recent developments in read alignment

LSCplus: a fast solution for improving long read accuracy by short read alignment

Bison: bisulfite alignment on nodes of a cluster

An effective method to resolve ambiguous bisulfite-treated reads

BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage

Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data

Probabilistic approaches to alignment with tandem repeats

Featherweight long read alignment using partitioned reference indexes

Simultaneous alignment of short reads against multiple genomes

Oculus: faster sequence alignment by streaming read compression

Technology dictates algorithms: recent developments in read alignment

LSCplus: a fast solution for improving long read accuracy by short read alignment

Bison: bisulfite alignment on nodes of a cluster

An effective method to resolve ambiguous bisulfite-treated reads

BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage

Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data

Probabilistic approaches to alignment with tandem repeats

Featherweight long read alignment using partitioned reference indexes

Simultaneous alignment of short reads against multiple genomes

Oculus: faster sequence alignment by streaming read compression

Technology dictates algorithms: recent developments in read alignment

LSCplus: a fast solution for improving long read accuracy by short read alignment

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