Probing cell identity hierarchies by fate titration and collision during direct reprogramming

Abstract: Despite the therapeutic promise of direct reprogramming, basic principles concerning fate erasure and the mechanisms to resolve cell identity conflicts remain unclear. To tackle these fundamental questions, we established a single‐cell protocol for the simultaneous analysis of multiple cell fate conversion events based on combinatorial and traceable reprogramming factor expression: Collide‐seq. Collide‐seq revealed the lack of a common mechanism through which fibroblast‐specific gene expression loss is initiated. Moreover, we found that the transcriptome of converting cells abruptly changes when a critical level of each reprogramming factor is attained, with higher or lower levels not contributing to major changes. By simultaneously inducing multiple competing reprogramming factors, we also found a deterministic system, in which titration of fates against each other yields dominant or colliding fates. By investigating one collision in detail, we show that reprogramming factors can disturb cell identity programs independent of their ability to bind their target genes. Taken together, Collide‐seq has shed light on several fundamental principles of fate conversion that may aid in improving current reprogramming paradigms.

Angaben zum Objekt

• Standort: Deutsche Nationalbibliothek Frankfurt am Main
• Umfang: Online-Ressource
• Sprache: Englisch

Verweise und Beziehungen

• Erschienen in: Probing cell identity hierarchies by fate titration and collision during direct reprogramming ; volume:18 ; number:9 ; year:2022 ; extent:28 ; Molecular systems biology ; 18, Heft 9 (2022) (gesamt 28)

Beteiligte, Orts- und Zeitangaben

• Urheber: Hersbach, Bob A. ; Fischer, David S. ; Masserdotti, Giacomo ; Deeksha ; Mojžišová, Karolina ; Waltzhöni, Thomas ; Rodriguez‐Terrones, Diego ; Heinig, Matthias ; Theis, Fabian J. ; Götz, Magdalena ; Stricker, Stefan H.

Weitere Informationen

• DOI: 10.15252/msb.202211129
• URN: urn:nbn:de:101:1-2022091615012375152021
• Rechteinformation: Open Access; Der Zugriff auf das Objekt ist unbeschränkt möglich.
• Letzte Aktualisierung: 15.08.2025, 07:21 MESZ