Arbeitspapier

The R-Package surveillance

This document gives an introduction to the R-Package 'surveillance' containing tools for outbreak detection in routinely collected surveillance data. The package contains an implementation of the procedures described by Stroup et al. (1989), Farrington et al. (1996) and the system used at the Robert Koch Institute, Germany. For evaluation purposes, the package contains example data sets and functionality to generate surveillance data by simulation. To compare the algorithms, benchmark numbers like sensitivity, specificity, and detection delay can be computed for a set of time series. Being an open-source package it should be easy to integrate new algorithms; as an example of this process, a simple Bayesian surveillance algorithm is described, implemented and evaluated.

Language
Englisch

Bibliographic citation
Series: Discussion Paper ; No. 422

Subject
infectious disease
monitoring
aberrations
outbreak
time series of counts

Event
Geistige Schöpfung
(who)
Höhle, Michael
Riebler, Andrea
Event
Veröffentlichung
(who)
Ludwig-Maximilians-Universität München, Sonderforschungsbereich 386 - Statistische Analyse diskreter Strukturen
(where)
München
(when)
2005

DOI
doi:10.5282/ubm/epub.1791
Handle
URN
urn:nbn:de:bvb:19-epub-1791-2
Last update
10.03.2025, 11:44 AM CET

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Object type

  • Arbeitspapier

Associated

  • Höhle, Michael
  • Riebler, Andrea
  • Ludwig-Maximilians-Universität München, Sonderforschungsbereich 386 - Statistische Analyse diskreter Strukturen

Time of origin

  • 2005

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