INFO-RNA—a server for fast inverse RNA folding satisfying sequence constraints

to connected objects

Abstract: INFO-RNA is a new web server for designing RNA sequences that fold into a user given secondary structure. Furthermore, constraints on the sequence can be specified, e.g. one can restrict sequence positions to a fixed nucleotide or to a set of nucleotides. Moreover, the user can allow violations of the constraints at some positions, which can be advantageous in complicated cases.

The INFO-RNA web server allows biologists to design RNA sequences in an automatic manner. It is clearly and intuitively arranged and easy to use. The procedure is fast, as most applications are completed within seconds and it proceeds better and faster than other existing tools. The INFO-RNA web server is freely available at http://www.bioinf.uni-freiburg.de/Software/INFO-RNA

Location: Deutsche Nationalbibliothek Frankfurt am Main

Extent: Online-Ressource

Language: Englisch

Notes: Nucleic acids research. - 35, suppl_2 (2007) , W310-W313, ISSN: 1362-4962

Classification: Biowissenschaften, Biologie

Event: Veröffentlichung

(where): Freiburg

(who): Universität

(when): 2019

Creator: Busch, Anke
Backofen, Rolf

DOI: 10.1093/nar/gkm218

URN: urn:nbn:de:bsz:25-freidok-1091833

Rights: Open Access; Der Zugriff auf das Objekt ist unbeschränkt möglich.

Last update: 25.03.2025, 1:43 PM CET

Data provider

This object is provided by:
Deutsche Nationalbibliothek. If you have any questions about the object, please contact the data provider.

Show original at data provider

Associated

Time of origin

2019

Other Objects (12)

Hochschulschrift

Ant colony optimization based inverse folding of mono- and bistable RNA macromolecules

Hochschulschrift

Computational analysis and prediction of RNA-RNA interactions : = Computergestützte Analyse und Vorhersage von RNA-RNA-Interaktionen

Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments

Recent advances in RNA folding

Hochschulschrift

Using local RNA secondary structures for computational comparison and clustering of RNA molecules

Hochschulschrift | Online-Publikation

Expressivity and decidability of first-order languages over feature trees

Hochschulschrift

Expressivity and decidability of first-order languages over feature trees

IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions

Variations on RNA folding and alignment : lessons from Benasque

Interactive implementations of thermodynamics-based RNA structure and RNA–RNA interaction prediction approaches for example-driven teaching

Integration of accessibility data from structure probing into RNA–RNA interaction prediction

CopomuS - ranking compensatory mutations to guide RNA-RNA interaction verification experiments

Hochschulschrift

Ant colony optimization based inverse folding of mono- and bistable RNA macromolecules

Hochschulschrift

Computational analysis and prediction of RNA-RNA interactions : = Computergestützte Analyse und Vorhersage von RNA-RNA-Interaktionen

Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments

Recent advances in RNA folding

Hochschulschrift

Using local RNA secondary structures for computational comparison and clustering of RNA molecules

Hochschulschrift | Online-Publikation

Expressivity and decidability of first-order languages over feature trees

Hochschulschrift

Expressivity and decidability of first-order languages over feature trees

IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions

Variations on RNA folding and alignment : lessons from Benasque

Interactive implementations of thermodynamics-based RNA structure and RNA–RNA interaction prediction approaches for example-driven teaching

Integration of accessibility data from structure probing into RNA–RNA interaction prediction

CopomuS - ranking compensatory mutations to guide RNA-RNA interaction verification experiments

Hochschulschrift

Ant colony optimization based inverse folding of mono- and bistable RNA macromolecules

Hochschulschrift

Computational analysis and prediction of RNA-RNA interactions : = Computergestützte Analyse und Vorhersage von RNA-RNA-Interaktionen

Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments

Recent advances in RNA folding

Hochschulschrift

Using local RNA secondary structures for computational comparison and clustering of RNA molecules

Hochschulschrift | Online-Publikation

Expressivity and decidability of first-order languages over feature trees

Hochschulschrift

Expressivity and decidability of first-order languages over feature trees

IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions

Variations on RNA folding and alignment : lessons from Benasque

Interactive implementations of thermodynamics-based RNA structure and RNA–RNA interaction prediction approaches for example-driven teaching

Integration of accessibility data from structure probing into RNA–RNA interaction prediction

CopomuS - ranking compensatory mutations to guide RNA-RNA interaction verification experiments

Cultural heritage institutions wishing to register will find more information here.

Fields marked * need to be filled in.

Username*

Please enter your username

Email*

Please enter your email address

Please do not fill this field

First name

Last name

Password*

Please enter your password

Confirm password*

Please enter the same password

I have read the terms of use and the privacy policy for the collection of personal data and accept them. *

This field is required.

I would like to subscribe to the newsletter of the Deutsche Digitale Bibliothek. See newsletter subscription info.

Account created

Your "My DDB" account has been successfully created. Before you can log in to your account, you must click the confirmation link in the message we just sent to the email address you provided.

INFO-RNA—a server for fast inverse RNA folding satisfying sequence constraints

Object Details

Classification and Topics

Contributors, Places and Time

Further information

Data provider

Associated

Time of origin

Other Objects (12)

Ant colony optimization based inverse folding of mono- and bistable RNA macromolecules

Computational analysis and prediction of RNA-RNA interactions : = Computergestützte Analyse und Vorhersage von RNA-RNA-Interaktionen

Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments

Recent advances in RNA folding

Using local RNA secondary structures for computational comparison and clustering of RNA molecules

Expressivity and decidability of first-order languages over feature trees

Expressivity and decidability of first-order languages over feature trees

IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions

Variations on RNA folding and alignment : lessons from Benasque

Interactive implementations of thermodynamics-based RNA structure and RNA–RNA interaction prediction approaches for example-driven teaching

Integration of accessibility data from structure probing into RNA–RNA interaction prediction

CopomuS - ranking compensatory mutations to guide RNA-RNA interaction verification experiments

Ant colony optimization based inverse folding of mono- and bistable RNA macromolecules

Computational analysis and prediction of RNA-RNA interactions : = Computergestützte Analyse und Vorhersage von RNA-RNA-Interaktionen

Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments

Recent advances in RNA folding

Using local RNA secondary structures for computational comparison and clustering of RNA molecules

Expressivity and decidability of first-order languages over feature trees

Expressivity and decidability of first-order languages over feature trees

IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions

Variations on RNA folding and alignment : lessons from Benasque

Interactive implementations of thermodynamics-based RNA structure and RNA–RNA interaction prediction approaches for example-driven teaching

Integration of accessibility data from structure probing into RNA–RNA interaction prediction

CopomuS - ranking compensatory mutations to guide RNA-RNA interaction verification experiments

Ant colony optimization based inverse folding of mono- and bistable RNA macromolecules

Computational analysis and prediction of RNA-RNA interactions : = Computergestützte Analyse und Vorhersage von RNA-RNA-Interaktionen

Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments

Recent advances in RNA folding

Using local RNA secondary structures for computational comparison and clustering of RNA molecules

Expressivity and decidability of first-order languages over feature trees

Expressivity and decidability of first-order languages over feature trees

IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions

Variations on RNA folding and alignment : lessons from Benasque

Interactive implementations of thermodynamics-based RNA structure and RNA–RNA interaction prediction approaches for example-driven teaching

Integration of accessibility data from structure probing into RNA–RNA interaction prediction

CopomuS - ranking compensatory mutations to guide RNA-RNA interaction verification experiments

Related objects

Reset password