A SARS-CoV-2 sequence submission tool for the European Nucleotide Archive
Abstract: Summary
Many aspects of the global response to the COVID-19 pandemic are enabled by the fast and open publication of SARS-CoV-2 genetic sequence data. The European Nucleotide Archive (ENA) is the European recommended open repository for genetic sequences. In this work, we present a tool for submitting raw sequencing reads of SARS-CoV-2 to ENA. The tool features a single-step submission process, a graphical user interface, tabular-formatted metadata and the possibility to remove human reads prior to submission. A Galaxy wrap of the tool allows users with little or no bioinformatics knowledge to do bulk sequencing read submissions. The tool is also packed in a Docker container to ease deployment
- Standort
-
Deutsche Nationalbibliothek Frankfurt am Main
- Umfang
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Online-Ressource
- Sprache
-
Englisch
- Anmerkungen
-
Bioinformatics. - 37, 21 (2021) , 3983-3985, ISSN: 1367-4803
- Klassifikation
-
Bibliotheks- und Informationswissenschaft
- Ereignis
-
Veröffentlichung
- (wo)
-
Freiburg
- (wer)
-
Universität
- (wann)
-
2024
- Urheber
-
Roncoroni, Miguel
Grüning, Björn
Backofen, Rolf
De Ruyck, Kim
D’Anna, Flora
Yusuf, Dilmurat
Coppens, Frederik
- DOI
-
10.1093/bioinformatics/btab421
- URN
-
urn:nbn:de:bsz:25-freidok-2478377
- Rechteinformation
-
Open Access; Der Zugriff auf das Objekt ist unbeschränkt möglich.
- Letzte Aktualisierung
-
14.08.2025, 10:59 MESZ
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Beteiligte
- Roncoroni, Miguel
- Grüning, Björn
- Backofen, Rolf
- De Ruyck, Kim
- D’Anna, Flora
- Yusuf, Dilmurat
- Coppens, Frederik
- Universität
Entstanden
- 2024
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