iCLIP data analysis: A complete pipeline from sequencing reads to RBP binding sites

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Location: Deutsche Nationalbibliothek Frankfurt am Main

Extent: Online-Ressource

Language: Englisch

Bibliographic citation: In: Methods, 178.2019, S. 49-62, doi:10.1016/j.ymeth.2019.11.008

Event: Veröffentlichung

(where): Frankfurt am Main

(who): Universitätsbibliothek Johann Christian Senckenberg

(when): 2019

Creator: Busch, Anke
Brüggemann, Mirko
Ebersberger, Stefanie
Zarnack, Katharina

URN: urn:nbn:de:hebis:30:3-535343

Rights: Der Zugriff auf das Objekt ist unbeschränkt möglich.

Last update: 14.08.2025, 10:44 AM CEST

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Associated

Busch, Anke
Brüggemann, Mirko
Ebersberger, Stefanie
Zarnack, Katharina
Universitätsbibliothek Johann Christian Senckenberg

Time of origin

2019

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racoon_clip – a complete pipeline for single-nucleotide analyses of iCLIP and eCLIP data

SnakeLines: integrated set of computational pipelines for sequencing reads

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A pipeline for complete characterization of complex germline rearrangements from long DNA reads

ProcaryaSV: structural variation detection pipeline for bacterial genomes using short-read sequencing

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TreeToReads - a pipeline for simulating raw reads from phylogenies

Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms

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Hochschulschrift

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racoon_clip – a complete pipeline for single-nucleotide analyses of iCLIP and eCLIP data

SnakeLines: integrated set of computational pipelines for sequencing reads

Targeted sequencing analysis pipeline for species identification of human pathogenic fungi using long-read nanopore sequencing

A pipeline for complete characterization of complex germline rearrangements from long DNA reads

ProcaryaSV: structural variation detection pipeline for bacterial genomes using short-read sequencing

A complete pipeline enables haplotyping and phasing macrohaplotype in long sequencing reads for polyploidy samples and a multi‐source DNA mixture

TreeToReads - a pipeline for simulating raw reads from phylogenies

Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms

Efficient Recovery of Complete Gut Viral Genomes by Combined Short‐ and Long‐Read Sequencing

DNA read count calibration for single-molecule, long-read sequencing

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Hochschulschrift

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iCLIP data analysis: A complete pipeline from sequencing reads to RBP binding sites

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Other Objects (12)

racoon_clip – a complete pipeline for single-nucleotide analyses of iCLIP and eCLIP data

SnakeLines: integrated set of computational pipelines for sequencing reads

Targeted sequencing analysis pipeline for species identification of human pathogenic fungi using long-read nanopore sequencing

A pipeline for complete characterization of complex germline rearrangements from long DNA reads

ProcaryaSV: structural variation detection pipeline for bacterial genomes using short-read sequencing

A complete pipeline enables haplotyping and phasing macrohaplotype in long sequencing reads for polyploidy samples and a multi‐source DNA mixture

TreeToReads - a pipeline for simulating raw reads from phylogenies

Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms

Efficient Recovery of Complete Gut Viral Genomes by Combined Short‐ and Long‐Read Sequencing

DNA read count calibration for single-molecule, long-read sequencing

Long-read sequencing in human genetics

Gene prediction in metagenomic sequencing reads

racoon_clip – a complete pipeline for single-nucleotide analyses of iCLIP and eCLIP data

SnakeLines: integrated set of computational pipelines for sequencing reads

Targeted sequencing analysis pipeline for species identification of human pathogenic fungi using long-read nanopore sequencing

A pipeline for complete characterization of complex germline rearrangements from long DNA reads

ProcaryaSV: structural variation detection pipeline for bacterial genomes using short-read sequencing

A complete pipeline enables haplotyping and phasing macrohaplotype in long sequencing reads for polyploidy samples and a multi‐source DNA mixture

TreeToReads - a pipeline for simulating raw reads from phylogenies

Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms

Efficient Recovery of Complete Gut Viral Genomes by Combined Short‐ and Long‐Read Sequencing

DNA read count calibration for single-molecule, long-read sequencing

Long-read sequencing in human genetics

Gene prediction in metagenomic sequencing reads

racoon_clip – a complete pipeline for single-nucleotide analyses of iCLIP and eCLIP data

SnakeLines: integrated set of computational pipelines for sequencing reads

Targeted sequencing analysis pipeline for species identification of human pathogenic fungi using long-read nanopore sequencing

A pipeline for complete characterization of complex germline rearrangements from long DNA reads

ProcaryaSV: structural variation detection pipeline for bacterial genomes using short-read sequencing

A complete pipeline enables haplotyping and phasing macrohaplotype in long sequencing reads for polyploidy samples and a multi‐source DNA mixture

TreeToReads - a pipeline for simulating raw reads from phylogenies

Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms

Efficient Recovery of Complete Gut Viral Genomes by Combined Short‐ and Long‐Read Sequencing

DNA read count calibration for single-molecule, long-read sequencing

Long-read sequencing in human genetics

Gene prediction in metagenomic sequencing reads

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